PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G09705

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 677aa MW: 74998.7 Da PI: 5.1425

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G09705	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44	4.1e-14	456	502	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ Ro02_G09705 456 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 502 7999********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence
MAAPPPSSSR LRSMLQSAVQ SVQWTYSLFW QICPQQGMLI WADGYYNGAI KTRKTVQPME 60 VSSEEASLQR SQQLRELYDS LSAGETNQPA RRPCAALSPE DLTESEWFYL MCVSFSFPPG 120 VGKTFSRAIL AKSARVQTVV CIPILDGVVE LGTTDRIPED LAFVQHVKTF FVDNHHLPPP 180 KPALSEHSTS NPANSSDHHP RFHSPHLTDI RNNAAVANNA PPLHAAAQED EEDEEEEEDD 240 QDDEAESDSE AETGRNGRAL VAAGSNVPAA EPSELMQLEM SEDIRLGSPD DASNNLDSDF 300 NMLAVSQSAD QQRQAADSYR AESTRRWPPV QQPLSGVQPP PLGPLALEEL THDDTHYSET 360 VSTILQTQAT RRTDSSSNDY VTYSSQSAFA KWTSRGDHHH LLVPVEGTSQ WLLKYILFSV 420 PFLHTKYRDE NSPKSHDGDG STRLRKGTPQ DELSANHVLA ERRRREKLNE RFIILRSLVP 480 FVTKMDKASI LGDTIEYVKQ LRKKIQDLEA RNVHLEDDQR TRSLGEIQRS SSMKELRSGG 540 LDRTRTGPPG SDKRKLRIVE GSGGAAVAKP KVIEEAPPPP PPQAPEPSLP TPMLTGTSLE 600 VSIIESDGLL ELQCPYREGL LLDVMQTLRD LRIETTVVQS SLNSGTFVAE LRAKVGKKTS 660 ITEVKRAVNQ VIPQSDS

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence

MAAPPPSSSR LRSMLQSAVQ SVQWTYSLFW QICPQQGMLI WADGYYNGAI KTRKTVQPME  60
VSSEEASLQR SQQLRELYDS LSAGETNQPA RRPCAALSPE DLTESEWFYL MCVSFSFPPG  120
VGKTFSRAIL AKSARVQTVV CIPILDGVVE LGTTDRIPED LAFVQHVKTF FVDNHHLPPP  180
KPALSEHSTS NPANSSDHHP RFHSPHLTDI RNNAAVANNA PPLHAAAQED EEDEEEEEDD  240
QDDEAESDSE AETGRNGRAL VAAGSNVPAA EPSELMQLEM SEDIRLGSPD DASNNLDSDF  300
NMLAVSQSAD QQRQAADSYR AESTRRWPPV QQPLSGVQPP PLGPLALEEL THDDTHYSET  360
VSTILQTQAT RRTDSSSNDY VTYSSQSAFA KWTSRGDHHH LLVPVEGTSQ WLLKYILFSV  420
PFLHTKYRDE NSPKSHDGDG STRLRKGTPQ DELSANHVLA ERRRREKLNE RFIILRSLVP  480
FVTKMDKASI LGDTIEYVKQ LRKKIQDLEA RNVHLEDDQR TRSLGEIQRS SSMKELRSGG  540
LDRTRTGPPG SDKRKLRIVE GSGGAAVAKP KVIEEAPPPP PPQAPEPSLP TPMLTGTSLE  600
VSIIESDGLL ELQCPYREGL LLDVMQTLRD LRIETTVVQS SLNSGTFVAE LRAKVGKKTS  660
ITEVKRAVNQ VIPQSDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	461	466	ERRRRE
2	462	467	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	3e-80	bHLH family protein