PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G10941
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family FAR1
Protein Properties Length: 256aa    MW: 29993.3 Da    PI: 10.1002
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G10941genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR194.21.6e-2991178290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+++ k+ +++r++ra tr gCka+++vk+ek+gkw vt++ +eHnH+l+
  Ro02_G10941  91 FYDAYATQLGFIMRVDAFRRSLRDGKVVWRRLVCNKEGFRKTRPKR-SENRKPRAITREGCKAMIVVKREKSGKWIVTRFIKEHNHSLV 178
                  9*******************************************99.9**************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MKTGNLVVRV FRRPKIFFWL SWTDRKEERG YRAAEKEERV KPTMEEQPSM SKDEDMIESS  60
NGKEVATFEG SSDMEPCVGM EFETEEAAKV FYDAYATQLG FIMRVDAFRR SLRDGKVVWR  120
RLVCNKEGFR KTRPKRSENR KPRAITREGC KAMIVVKREK SGKWIVTRFI KEHNHSLVVT  180
PANGRRTVLL SQTPDEKDMK IRELTAELQR ERKKSAAYQE QLNMVLQEME EHSNHLSRNI  240
DDIVQSVKEI ESKRAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.18e-93FAR1 family protein