PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G14233

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

DBB

Protein Properties

Length: 215aa MW: 24151 Da PI: 6.0228

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G14233	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.5	1.1e-07	3	43	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +C+ +++ e++lfC ++ lC+ C H+ H+ Ro02_G14233 3 IRCDVCDKAEATLFCCADEAALCDVCDRRVHHAnklaskHK 43 58**************************9964436666665 PP
2	zf-B_box	21.3	5.5e-07	55	92	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + C+ ++e + lfC++++ lC++C ++Hk Ht Ro02_G14233 55 SPQCDICQERHGFLFCQEDRAILCRECDHSIHKAneHT 92 689****99*******************888876 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MKIRCDVCDK AEATLFCCAD EAALCDVCDR RVHHANKLAS KHKRFFLLQP TVKDSPQCDI 60 CQERHGFLFC QEDRAILCRE CDHSIHKANE HTKKHNRFLL TGVKLSTDTT LFPTSSSSCS 120 TFSDEVVITN STDHARVSKS STKRPRTGCN EQTLSSSSYK VDENCSISDN GSVISTNNIS 180 EYLMGDQMAE WRVEDLLDVS FDFDGLYEVG SAPYI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	9e-59	DBB family protein