PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G15129
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family FAR1
Protein Properties Length: 314aa    MW: 34530.4 Da    PI: 5.0734
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G15129genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1103.71.7e-3285176291
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                  fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+  +++ +r+r+ tr+gCka+l vk++++gkw+v+ +++eHnHel+p
  Ro02_G15129  85 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVKEHNHELVP 176
                  ****************************************998888545677889***********************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MDNEMIEFDI GLGGREGDDD FVEIEHPVED EEMVDSPLIG SASGSASGLG FNGGSGEIYL  60
PEGDLLDLEP YDGMEFESEE AAKAFYNSYA RRVGFSTRVS SSRRSRRDGA IIQRQFVCAK  120
EGFRNLNEKR TKDREIKRPR TITRVGCKAS LSVKMQDSGK WVVSGFVKEH NHELVPPDQV  180
HCLRSHRQIS DGAKSSETYD LALDALKEAA KKVAHAMKND GRNVMRNGHI RGNLAGGASR  240
ANYTIGHHDG NSGQNLSEDD MDKNIRELTT ELECANRKCE ASNLAGVPEF QDAALPPILI  300
EFSADLVPIP ASSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-79FAR1 family protein