PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G15479

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

SRS

Protein Properties

Length: 215aa MW: 23961.8 Da PI: 8.6513

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G15479	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	168.4	3.8e-52	24	172	5	153
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102 +++C+dCGn+akk+C ++RCRtCCk++gf+C+thvkstWvp +kr+ +++ ++ +++++ + a+ +++ + +k++ +++ + +sa + Ro02_G15479 24 RSRCEDCGNKAKKGCLYMRCRTCCKNNGFQCQTHVKSTWVPLHKRSLLHDERHTDDDHHQQQ-RLATDQEHIIINPNKRQRQHNPSSQSAGL-DRDQE 119 579***************************************998655555544433333.33333333333334444444433333333.33445 PP DUF702 103 sslPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGle 153 +++P+ev+++ f+cvrvssv++ + ++ aYqt+v igGhvfkGiLydqG++ Ro02_G15479 120 AKFPAEVNTMTKFQCVRVSSVNNmvDLDQHAYQTSVIIGGHVFKGILYDQGPD 172 66*****************766689********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MVRLRQGGSG GGGGGRGGLT MGSRSRCEDC GNKAKKGCLY MRCRTCCKNN GFQCQTHVKS 60 TWVPLHKRSL LHDERHTDDD HHQQQRLATD QEHIIINPNK RQRQHNPSSQ SAGLDRDQEA 120 KFPAEVNTMT KFQCVRVSSV NNMVDLDQHA YQTSVIIGGH VFKGILYDQG PDVHQSCYSI 180 SASAPDQPHL PPPSSSYQLI NPFNAFIPAG YRFND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	8e-40	SRS family protein