PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G15888

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 600aa MW: 66353.8 Da PI: 5.5327

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G15888	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.9	2.4e-10	204	244	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR++iN+++ L+ l+P+ +K++ +++Le AveY+k Lq Ro02_G15888 204 RKRREKINERLRILQNLVPNG-----TKVDISTMLEDAVEYVKFLQ 244 9****************97.....8****************9 PP
2	HLH	30.3	7.8e-10	524	564	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR++iN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Ro02_G15888 524 RKRREKINERLRVLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 564 9****************97.....8****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence
MEALAVSPEV MYTSEDEDMI MSQLLANYCS VTNELNHQAS SSQIPFANFP SSHECSTATN 60 MEGIANLYSH RVMATNHHNP EDFCLWDANS AINLFLSQSG ENGGMDQVLS NANAEDHEVM 120 PENSKKRSCS TSADHVQKNK RNVKSKKEVL TRNIEDSCSS GDDESMIANS HQDSSPKGAA 180 TLNLNCKKTR ARGLATDSQS TYARKRREKI NERLRILQNL VPNGTKVDIS TMLEDAVEYV 240 KFLQLQIKLL SSDELWISNM EYVGAVSEGE WSSLSGMYTA EEADFMARLL ENCPFSNMPG 300 MAVPDAFWQG NEDSTMNMSG NYEASHCSLE TTNSNFLASS NGSYYLSDSH PMLPTNNNSN 360 SSMSIDFGMG DVKNINTYLI EGDDHDQCLN QETSKGNIEE SGGIRTQAAV NLEKKRSQSN 420 LSKIKSMKRS QSSDNVQMNK RNMKAKKSLQ VTTSNNEDVG NAGRNRHSSS SCCSEDDSVA 480 CKEVSGGFSP TSSLSPKEAA IPNLNGKSRA RRGSASDPQS LYARKRREKI NERLRVLQNL 540 VPNGTKVDIS TMLEEAVHYV KFLQLQIKLL SSDDMWMYAP ICYNGMDLGL DRKLTAPSQP

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence

MEALAVSPEV MYTSEDEDMI MSQLLANYCS VTNELNHQAS SSQIPFANFP SSHECSTATN  60
MEGIANLYSH RVMATNHHNP EDFCLWDANS AINLFLSQSG ENGGMDQVLS NANAEDHEVM  120
PENSKKRSCS TSADHVQKNK RNVKSKKEVL TRNIEDSCSS GDDESMIANS HQDSSPKGAA  180
TLNLNCKKTR ARGLATDSQS TYARKRREKI NERLRILQNL VPNGTKVDIS TMLEDAVEYV  240
KFLQLQIKLL SSDELWISNM EYVGAVSEGE WSSLSGMYTA EEADFMARLL ENCPFSNMPG  300
MAVPDAFWQG NEDSTMNMSG NYEASHCSLE TTNSNFLASS NGSYYLSDSH PMLPTNNNSN  360
SSMSIDFGMG DVKNINTYLI EGDDHDQCLN QETSKGNIEE SGGIRTQAAV NLEKKRSQSN  420
LSKIKSMKRS QSSDNVQMNK RNMKAKKSLQ VTTSNNEDVG NAGRNRHSSS SCCSEDDSVA  480
CKEVSGGFSP TSSLSPKEAA IPNLNGKSRA RRGSASDPQS LYARKRREKI NERLRVLQNL  540
VPNGTKVDIS TMLEEAVHYV KFLQLQIKLL SSDDMWMYAP ICYNGMDLGL DRKLTAPSQP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	204	209	RKRREK
2	524	529	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33880.1	6e-66	bHLH family protein