PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G15900
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 186aa    MW: 19521.8 Da    PI: 8.6145
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G15900genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00132850123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C  C+k F +   L  H  +H
  Ro02_G15900 28 YRCDVCNKAFGSYQALGGHKASH 50
                 9*********9999998888777 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MLLARGTTNT ATPAAEPTHP PPHPPASYRC DVCNKAFGSY QALGGHKASH RKSDASAAAA  60
VKTEIQTVSA VSTGMAASGR THECTICHKC FPTGQALGGH KRCHYDGGSS TANSAVTTIS  120
EGGGASSHSQ TQSQRGFVLD LNLPAEPEVQ VWPGFDKKKS ARVSADQEEV QSPMPEKKPR  180
LTLGRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.19e-40C2H2 family protein