PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G15904
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family LBD
Protein Properties Length: 210aa    MW: 23016 Da    PI: 8.0703
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G15904genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.31.1e-282103197
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+++C+l++++     p++q++++ +v+k+FG++ +l++++ ++e++r+++++sl++eA  r+ +Pv+Ga+g++l+++++++q+++e
  Ro02_G15904   2 SCNGCRVLRKGCSENCMLRQCIewmedPQAQAHATVFVAKFFGRAGLLSFINGVSETQRPALFQSLLFEAVGRTINPVNGATGLLLAGNWKVCQSAVE 99 
                  6***********************************************************************************************99 PP

       DUF260  94 lall 97 
                  ++l+
  Ro02_G15904 100 TVLR 103
                  8876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MSCNGCRVLR KGCSENCMLR QCIEWMEDPQ AQAHATVFVA KFFGRAGLLS FINGVSETQR  60
PALFQSLLFE AVGRTINPVN GATGLLLAGN WKVCQSAVET VLRGGALEPL PEYSRHGVHH  120
VRQQRRDEHY STKSSTKKRP GLLALDDDER PDLDLSLKAL SKVRRDGHDR AATPSSVEDS  180
ETTTLSRSGS SSADCTTNGL EGTNLLRLFI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.13e-65LBD family protein