PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G16205

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bZIP

Protein Properties

Length: 172aa MW: 19234.5 Da PI: 5.2786

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G16205	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.4	3.6e-14	30	88	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +r+ +NRe+ArrsR RK++ ++ L+ ++ L +eN++ ++ l+ ++++ ++++++ Ro02_G16205 30 RKRKRMLSNRESARRSRMRKQKHLDDLTAQMALLRKENHQIISSLNITSQHYMNMEADN 88 67899******************************************999999998877 PP

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence
MASSSGTSSV SSMIQNSGSE EDLQALMDQR KRKRMLSNRE SARRSRMRKQ KHLDDLTAQM 60 ALLRKENHQI ISSLNITSQH YMNMEADNSV LRAQVAELRN RLQSLNEIIT FLNANNGGGV 120 VEDYSSNNNF TEPSADCFFN PLNLSYLNQP IMASAEITET ALGEGLSVEE QC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	30	51	RKRKRMLSNRESARRSRMRKQK
2	43	50	RRSRMRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75390.1	5e-52	bZIP family protein