PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G16405

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Protein Properties

Length: 1344aa MW: 150029 Da PI: 6.0579

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G16405	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54	3e-17	85	174	2	99
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +kv++ps+v++ +l lp+ f+ eh+ k +++++ledesg++++ k+ ++++ l++GW++F ++L egD+vvF+l+ s+f +v ++r+ Ro02_G16405 85 VKVMMPSHVTRVFWLGLPRAFCCEHMPK--HDTMIVLEDESGEEYQTKY--LVGKDG--LSGGWRGFSVVHKLLEGDVVVFHLVTPSKF--KVYIVRS 174 69******************999744..6779***********..556555..9********************9987888..8888775 PP
2	B3	52.5	9.2e-17	563	643	3	89
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 kv+ ps+v+ +l+lpkkf+ eh + + +++++ledesgr+++ k+ + k++ l++GW++F a++L +gD+vvF+++ s+ Ro02_G16405 563 KVMRPSNVTGCFCLSLPKKFCFEHL-P-KHDTMIVLEDESGREFQTKYLVGKSG----LSGGWRGFSIAHKLLAGDVVVFHRVTPSK 643 8999***************9994.3.35679***********555555....9********************765454 PP
3	B3	53.5	4.4e-17	997	1080	2	91
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 +kv++ps+v+ +l lpkkf+++h k ++++ ledesg++++ ++ ++ + l++GW++F a++L egD++vF+++ s+f+ Ro02_G16405 997 IKVMLPSHVTGGFWLGLPKKFCRQHLPK--HDTMIALEDESGEEYQTRY--LANK--VGLSGGWRGFSIAHKLVEGDVLVFHRVTPSKFK 1080 699********************533..5679***********..5555..45*********************77656663 PP

Sequence ? help Back to Top
Protein Sequence Length: 1344 aa Download sequence
MAVVEEQKES SSCPQPKLER VRPPENEDKA NVVNANPMKS ERHKPKRCKK TKVESLYDTF 60 QAQCSVLERA NEVAASLAPE FPSLVKVMMP SHVTRVFWLG LPRAFCCEHM PKHDTMIVLE 120 DESGEEYQTK YLVGKDGLSG GWRGFSVVHK LLEGDVVVFH LVTPSKFKVY IVRSNGSDEV 180 DCTLGLIKLD AGIRQIKTAE VTACESSENG KLEPISVEIP HENVQKENTI ACNTKFGPIS 240 DQSENDSEDL DSEVLDGIMV SESVIPFKEV CCITNFNIKV SGLIINAEIS KHHLTKYYEL 300 CCSQNSFLHD HLEGLNCKLV AGIISETINI ADAIKACKIS TSECNFSTWS KTLEASEMLG 360 MNVGFLRARL EQLASLASES KLCKEAIFAR DQAVKDMRTL EAKLLKAKEI INRLDFEIVT 420 LNTSSKKLEA MFKELATLAT GLGLEHKETN ALPQVTSCLT LTQSMAIVPF QEQRSSTSPP 480 KFNMERPPKG KENPFREKSS CLKEITNIVT PDPLSFINSH KPKRCKKTTV ESLYDTSEAQ 540 NSVMERAKQL EANLALEFPR VAKVMRPSNV TGCFCLSLPK KFCFEHLPKH DTMIVLEDES 600 GREFQTKYLV GKSGLSGGWR GFSIAHKLLA GDVVVFHRVT PSKFKESPLN GELKKKVHIV 660 RSNGLDVADC ALGLVKLDVG ISQMDTVAIP REPIQKENTI ACNTSCGPIL DQSGNESEDF 720 GSEVLDGIRL SESVVPFKEV KCMENFDVII NGLILNSEFS KYHLTKYYEL CCSQNLFLHE 780 HILEGLNFKL VAGIISETIN ISDAIRACKI TTSECDLSTW DKTLQASEML GMNVGFLRTR 840 LNKLASLASE SKRCKDARLD GDQAEVVIKL LGEKENTNRL DSEIETHNVC PERLEAMFRE 900 VAKAPWLISA NYQATPDIEG ATLRERKTES MAIVQEQKQS SKKVKVNPQS FTNSLKPKRL 960 KRATEESVYD TSQAQFSVLE RAKEFEAKLA PEFPRLIKVM LPSHVTGGFW LGLPKKFCRQ 1020 HLPKHDTMIA LEDESGEEYQ TRYLANKVGL SGGWRGFSIA HKLVEGDVLV FHRVTPSKFK 1080 VTDVTFSERV YIIRSNGSDE LDSTLGLMKL DACIVEMDTG EIATCEGGEY ENLEPILVEN 1140 PKKNNTIAYN TKSSPVSDLS ENDTGGLDGI RLAESVIPFT EVSSLDNFNI IIDGFIINSE 1200 FSKPVLAKYY DLCCSQNTYL HEHLLEGLNW QLINGAISEI TIIADAIRTC KASTLECNFS 1260 TWNKTLKAFE MFGMNTGFLS TRLDKLASLA SESKRSKEAR LARDKAEEEK RVLEAKLSEV 1320 KETISRLDSE IETLNVSSDK FELK

Sequence ? help Back to Top

Protein Sequence Length: 1344 aa Download sequence

MAVVEEQKES SSCPQPKLER VRPPENEDKA NVVNANPMKS ERHKPKRCKK TKVESLYDTF  60
QAQCSVLERA NEVAASLAPE FPSLVKVMMP SHVTRVFWLG LPRAFCCEHM PKHDTMIVLE  120
DESGEEYQTK YLVGKDGLSG GWRGFSVVHK LLEGDVVVFH LVTPSKFKVY IVRSNGSDEV  180
DCTLGLIKLD AGIRQIKTAE VTACESSENG KLEPISVEIP HENVQKENTI ACNTKFGPIS  240
DQSENDSEDL DSEVLDGIMV SESVIPFKEV CCITNFNIKV SGLIINAEIS KHHLTKYYEL  300
CCSQNSFLHD HLEGLNCKLV AGIISETINI ADAIKACKIS TSECNFSTWS KTLEASEMLG  360
MNVGFLRARL EQLASLASES KLCKEAIFAR DQAVKDMRTL EAKLLKAKEI INRLDFEIVT  420
LNTSSKKLEA MFKELATLAT GLGLEHKETN ALPQVTSCLT LTQSMAIVPF QEQRSSTSPP  480
KFNMERPPKG KENPFREKSS CLKEITNIVT PDPLSFINSH KPKRCKKTTV ESLYDTSEAQ  540
NSVMERAKQL EANLALEFPR VAKVMRPSNV TGCFCLSLPK KFCFEHLPKH DTMIVLEDES  600
GREFQTKYLV GKSGLSGGWR GFSIAHKLLA GDVVVFHRVT PSKFKESPLN GELKKKVHIV  660
RSNGLDVADC ALGLVKLDVG ISQMDTVAIP REPIQKENTI ACNTSCGPIL DQSGNESEDF  720
GSEVLDGIRL SESVVPFKEV KCMENFDVII NGLILNSEFS KYHLTKYYEL CCSQNLFLHE  780
HILEGLNFKL VAGIISETIN ISDAIRACKI TTSECDLSTW DKTLQASEML GMNVGFLRTR  840
LNKLASLASE SKRCKDARLD GDQAEVVIKL LGEKENTNRL DSEIETHNVC PERLEAMFRE  900
VAKAPWLISA NYQATPDIEG ATLRERKTES MAIVQEQKQS SKKVKVNPQS FTNSLKPKRL  960
KRATEESVYD TSQAQFSVLE RAKEFEAKLA PEFPRLIKVM LPSHVTGGFW LGLPKKFCRQ  1020
HLPKHDTMIA LEDESGEEYQ TRYLANKVGL SGGWRGFSIA HKLVEGDVLV FHRVTPSKFK  1080
VTDVTFSERV YIIRSNGSDE LDSTLGLMKL DACIVEMDTG EIATCEGGEY ENLEPILVEN  1140
PKKNNTIAYN TKSSPVSDLS ENDTGGLDGI RLAESVIPFT EVSSLDNFNI IIDGFIINSE  1200
FSKPVLAKYY DLCCSQNTYL HEHLLEGLNW QLINGAISEI TIIADAIRTC KASTLECNFS  1260
TWNKTLKAFE MFGMNTGFLS TRLDKLASLA SESKRSKEAR LARDKAEEEK RVLEAKLSEV  1320
KETISRLDSE IETLNVSSDK FELK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-38	B3 family protein