PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G18470
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family LBD
Protein Properties Length: 232aa    MW: 25248.3 Da    PI: 7.8306
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G18470genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.92e-39411421101
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll+++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l++ela++
  Ro02_G18470  41 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLQHIPLNRRRDAIVTISYEAQARLSDPVYGCVSTILALQQQVASLQTELAMV 138
                  7***********************9989*********************************************************************9 PP

       DUF260  98 keel 101
                  +++l
  Ro02_G18470 139 QTQL 142
                  9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MADEPQGKHH GTSSRKATLG CGKKRTEVDH RESSSSAASA PCGACKFLRR KCISGCIFAP  60
HFGSDQGAAR FAAVHKVFGA SNVSKLLQHI PLNRRRDAIV TISYEAQARL SDPVYGCVST  120
ILALQQQVAS LQTELAMVQT QLINSRFAFA NALQSSQQQQ PQNMALLQPA YSNNSSASTN  180
LINMSSFTSN FHDLASETAP CSHSLVPLML SRPSQDEEED EEESLVPHVQ FR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.16e-72LBD family protein