PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G20842

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 540aa MW: 58879.6 Da PI: 6.9391

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G20842	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.6e-09	363	410	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Ro02_G20842 363 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 410 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MENNFFLNAG IPPSLHFEPA QSMLSWRSLS TAMEIQSTEQ NCSSERSPEC FYNPNWDKST 60 DHQSVHFESA LSSMVSSPVA SNSNISNESF VIRELIGKLG SIGNNSGEIS AAIPANNSYM 120 GGGNSSTNTS CYTTPLNSPP KLNLPIMDHL PKEKLPKSMP LNSSVAEFSA DPGFAERAAK 180 FSCFGSRSFN GRTTQLGTHT NNSEVAYRSN QPMGNGNKLP RVSSSPSLKA LGSQTEHRNS 240 QLPNSRQDSK STLVSEQQNP TGETGLVPSS IDLSSRKRKA ASKGKAKDPL KGAEVGDTSD 300 LNAKRCKPNE GNGNIENGSV KAEEDTKGST SSDEKQGKTC PKPPEPLKDY IHVRARRGQA 360 TDSHSLAERV RREKISERMK LLQDLVPGCN KVTGKALMLD EIINYVQSLQ RQVEFLSMKL 420 SSVNTRLDFN MDALMSKEIF QQQNNSLPHP IFPSDSSAQA LYGHQQNPAH CSVDPLDTAL 480 CQSLGMQLPP LNAFSEAMPQ YPAFGEDDLQ TIVQMGFGQN PNKETEFQGS NQASHMKVEL

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MENNFFLNAG IPPSLHFEPA QSMLSWRSLS TAMEIQSTEQ NCSSERSPEC FYNPNWDKST  60
DHQSVHFESA LSSMVSSPVA SNSNISNESF VIRELIGKLG SIGNNSGEIS AAIPANNSYM  120
GGGNSSTNTS CYTTPLNSPP KLNLPIMDHL PKEKLPKSMP LNSSVAEFSA DPGFAERAAK  180
FSCFGSRSFN GRTTQLGTHT NNSEVAYRSN QPMGNGNKLP RVSSSPSLKA LGSQTEHRNS  240
QLPNSRQDSK STLVSEQQNP TGETGLVPSS IDLSSRKRKA ASKGKAKDPL KGAEVGDTSD  300
LNAKRCKPNE GNGNIENGSV KAEEDTKGST SSDEKQGKTC PKPPEPLKDY IHVRARRGQA  360
TDSHSLAERV RREKISERMK LLQDLVPGCN KVTGKALMLD EIINYVQSLQ RQVEFLSMKL  420
SSVNTRLDFN MDALMSKEIF QQQNNSLPHP IFPSDSSAQA LYGHQQNPAH CSVDPLDTAL  480
CQSLGMQLPP LNAFSEAMPQ YPAFGEDDLQ TIVQMGFGQN PNKETEFQGS NQASHMKVEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-117	bHLH family protein