PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G21865
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family Whirly
Protein Properties Length: 212aa    MW: 23597.3 Da    PI: 10.2875
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G21865genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly181.31.9e-56411724137
       Whirly   4 ktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpd 101
                  k+kaal++ +v+ptf++ldsg+l+++r+G+++l++++a++erkyd ek+q falsatev++l++l++k+sce+fhdp++++s++G+vrk+l+++P++d
  Ro02_G21865  41 KGKAALSLTPVLPTFTKLDSGSLVVDRRGSVMLKFMPAIGERKYDSEKRQLFALSATEVGSLISLGPKDSCELFHDPSMQSSKSGEVRKSLSIKPHAD 138
                  9************************************************************************************************* PP

       Whirly 102 GsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                  G  +f++l+v n+l+k+ esfsvPv+ aefav++++
  Ro02_G21865 139 G--YFISLTVVNNLLKTRESFSVPVTTAEFAVIKTA 172
                  5..9*****************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MMKLLRLFSS RNQLSKRHAL SLDAFTQSTS FSTARQNFSA KGKAALSLTP VLPTFTKLDS  60
GSLVVDRRGS VMLKFMPAIG ERKYDSEKRQ LFALSATEVG SLISLGPKDS CELFHDPSMQ  120
SSKSGEVRKS LSIKPHADGY FISLTVVNNL LKTRESFSVP VTTAEFAVIK TACSFALPHI  180
MGWDRLTNKV PRGIEVHESK MVEPQLLDEW ER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.13e-81Whirly family protein