PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G21897
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GATA
Protein Properties Length: 338aa    MW: 37555.1 Da    PI: 4.9981
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G21897genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.49.4e-19248281134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  Cs+C++ kTp+WR gp g+ktLCnaCG++y++ +
  Ro02_G21897 248 CSHCQVQKTPQWRTGPLGPKTLCNACGVRYKSGR 281
                  *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MEQCMEARAF KSSLRRELAM KSTQQVLIEE LWCATGISGV PSEDFSVDDL LDLSNGEFED  60
ESVEEEEQEE EEKDSVSVDS VENSISSNFT ESTLASQLAV PDDDIAELEW VSRFVDDSVS  120
EVSLLHPVGK FRPEALTENR SEPEAKHVQS RAPWLPSQVP VKARTKRFRP AGRVRSLWNP  180
LCDSPSLTSC LSSTSSSSGS SGFSLSTPCL IFTNPVHNTG VFLGEPPAKK PKKRPAVQTG  240
GEMFQRRCSH CQVQKTPQWR TGPLGPKTLC NACGVRYKSG RLFPEYRPAC SPTFSGDVHS  300
NSHRKVLEIR KRKDTGEPEL GLTQMIPIEI EMKGEFET
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34680.24e-48GATA family protein