PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G22729

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 1205aa MW: 136521 Da PI: 4.8456

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G22729	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.9	4.9e-10	322	388	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...................TTS-.STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.as................kapskK.lsKaeiLekAveYIksLq 55 +Er+RR+++N+++ +Lr+l+P+ + +s+ ++Ka+iL+ A+ ++k+Lq Ro02_G22729 322 VAERKRRKKLNEKLYKLRSLVPNiSKlmvdlrltitytsfatFMRSENvMDKASILKDAIVFVKDLQ 388 68*******************665***********95556666***************9 PP
2	HLH	38.8	1.6e-12	937	980	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ eLr l+P+ + Kl+ a+iL A+eY+ +Lq Ro02_G22729 937 VAERKRRKKLNDRLYELRALVPNiS------KLDRASILGDAIEYVLELQ 980 68*******************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 1205 aa Download sequence
MNMTMYYLIL ERLRPLVSLK GWDYCVLWRL SEDQRFIEWI GCCCSGIDED TQNGGQELLF 60 PVYQVFQCRD TMQHPRTNSC DLLAHLPSSM PLDSGIYAQT IMSNQPCWLN SSSSNIDSSA 120 KLERDGTTVL VPIAGGLMIE LFVSKDVSED QHVIDFITAQ CNIWREQDTL ISASNTCSTN 180 TPVLSPSMAS LDHHDSNLPY DITVGRIRLC PSESSSPLNF LQHVTSYNSE NRMKNSTSAC 240 NSDKRNSLES LDQEMGIQYT PNMHNIHAMD HPLESMEQQG TLDDQDSVKP ADHSVSDCSD 300 QTDENTNYKT KNGKEPQSKN LVAERKRRKK LNEKLYKLRS LVPNISKLMV DLRLTITYTS 360 FATFMRSENV MDKASILKDA IVFVKDLQRQ VKELQDELEH NSNEEGGGAK RTFNSISGNH 420 NNFQSEGPSQ NGTTMENKPE SCDKPQNVFH DSDHNTNEKG QQQMEPQVGV TQLDGNEFFV 480 TVFCEQKPEG FVRLIEALDS LGLEVTNANV TSFRSLVSNV FKVEKRDSEI LQADDVRDSL 540 LEITRNSSKA YWPEMAKTSG NDVPKISKAR QSTDIISCKT GIMNNIIMSN LLQRLRPLVG 600 LKGWDFCVLW KLSEDQRFIE WMDCCCSGTE ITQNGGYEDQ LLFPVCAVLP CRDTLLQHPR 660 TRSCDLLSKM SSSVPLDFGI YAETLLSNQP SWLNFSNSTY SSTSLEEDVG TRVLMPIPAG 720 LIELLVAKQV LEDQHVIDFI TDQYNMSIEQ DHMAISFGVK THDEIQSQRV LLDHEQMDPN 780 NHNFCSSDNS AMNFLQQFTH NLGNRTKNNI NYNVNSFEDS SSHEPFLSDK QMDHPFDNCS 840 AENGFEQAME AMQKSMMMSE TQATQHFHMQ YMDQPLEPDM DHEKEAGHND KDSNIINDDG 900 EQATDLNSDC SDHDQLDGED DAKYRRRNGK GQAKNLVAER KRRKKLNDRL YELRALVPNI 960 SKLDRASILG DAIEYVLELQ NQAKKLQDEL DDDHDHEEDG RVHKGAANKT SGITFHHNSL 1020 QSEIDQSQSG LDLKTEQYDH KVSNGLLLGT SGDGSVSKQS PDSEVIHDQK TQQMEPQVEV 1080 AQIDGNQFFV KVFCEHKPGG FVRLMEALSS LSLEVTNANV TSFRCLVSNV FVVERKDSEV 1140 VEADEVRDSL LELTRNPLRW RSEEVAKAKE IGIGLDNQHD HHHHHQNLHN QHYSPFHLHH 1200 LPAES

Sequence ? help Back to Top

Protein Sequence Length: 1205 aa Download sequence

MNMTMYYLIL ERLRPLVSLK GWDYCVLWRL SEDQRFIEWI GCCCSGIDED TQNGGQELLF  60
PVYQVFQCRD TMQHPRTNSC DLLAHLPSSM PLDSGIYAQT IMSNQPCWLN SSSSNIDSSA  120
KLERDGTTVL VPIAGGLMIE LFVSKDVSED QHVIDFITAQ CNIWREQDTL ISASNTCSTN  180
TPVLSPSMAS LDHHDSNLPY DITVGRIRLC PSESSSPLNF LQHVTSYNSE NRMKNSTSAC  240
NSDKRNSLES LDQEMGIQYT PNMHNIHAMD HPLESMEQQG TLDDQDSVKP ADHSVSDCSD  300
QTDENTNYKT KNGKEPQSKN LVAERKRRKK LNEKLYKLRS LVPNISKLMV DLRLTITYTS  360
FATFMRSENV MDKASILKDA IVFVKDLQRQ VKELQDELEH NSNEEGGGAK RTFNSISGNH  420
NNFQSEGPSQ NGTTMENKPE SCDKPQNVFH DSDHNTNEKG QQQMEPQVGV TQLDGNEFFV  480
TVFCEQKPEG FVRLIEALDS LGLEVTNANV TSFRSLVSNV FKVEKRDSEI LQADDVRDSL  540
LEITRNSSKA YWPEMAKTSG NDVPKISKAR QSTDIISCKT GIMNNIIMSN LLQRLRPLVG  600
LKGWDFCVLW KLSEDQRFIE WMDCCCSGTE ITQNGGYEDQ LLFPVCAVLP CRDTLLQHPR  660
TRSCDLLSKM SSSVPLDFGI YAETLLSNQP SWLNFSNSTY SSTSLEEDVG TRVLMPIPAG  720
LIELLVAKQV LEDQHVIDFI TDQYNMSIEQ DHMAISFGVK THDEIQSQRV LLDHEQMDPN  780
NHNFCSSDNS AMNFLQQFTH NLGNRTKNNI NYNVNSFEDS SSHEPFLSDK QMDHPFDNCS  840
AENGFEQAME AMQKSMMMSE TQATQHFHMQ YMDQPLEPDM DHEKEAGHND KDSNIINDDG  900
EQATDLNSDC SDHDQLDGED DAKYRRRNGK GQAKNLVAER KRRKKLNDRL YELRALVPNI  960
SKLDRASILG DAIEYVLELQ NQAKKLQDEL DDDHDHEEDG RVHKGAANKT SGITFHHNSL  1020
QSEIDQSQSG LDLKTEQYDH KVSNGLLLGT SGDGSVSKQS PDSEVIHDQK TQQMEPQVEV  1080
AQIDGNQFFV KVFCEHKPGG FVRLMEALSS LSLEVTNANV TSFRCLVSNV FVVERKDSEV  1140
VEADEVRDSL LELTRNPLRW RSEEVAKAKE IGIGLDNQHD HHHHHQNLHN QHYSPFHLHH  1200
LPAES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	324	331	ERKRRKKL
2	925	945	RRRNGKGQAKNLVAERKRRKK
3	939	946	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-124	bHLH family protein