PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G22766
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB
Protein Properties Length: 275aa    MW: 30885.3 Da    PI: 4.8341
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G22766genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv +++q+G g+W++ ++  g+ R++k+c++rw +yl
      Ro02_G22766 14 KGPWTPEEDHVLVTYIQQYGHGNWRALPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding50.54.9e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l
      Ro02_G22766  67 RGNFSREEEDAIINLHQMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MVRAPCCEKM GLKKGPWTPE EDHVLVTYIQ QYGHGNWRAL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF SREEEDAIIN LHQMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKKLNTRQ  120
NPTTTVAQGP ESEPKPEPES TSYYAKSESF EYGPVSPPQC TTSSADDTSS FTTSGNNDIS  180
TNTAMKVDTS EANLPEADES FWSEVLSADQ NSSNETVSHD FDQAIGEAVD PQVNTTVQLV  240
SMDHGFSGLN MYDNCMDFWY NVFTRAGEIP ELLEI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-80MYB family protein