PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G22770
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 186aa    MW: 21190.1 Da    PI: 8.9158
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G22770genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.4e-1963113255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+++AeIrd + +g   r++lg+f++ae Aa a+++a+ +l+g
  Ro02_G22770  63 SYRGVRRRP-WGKYAAEIRDSTRRG--VRVWLGTFDSAEAAALAYDQAAFALRG 113
                  69*******.**********43343..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MLDFPPFSTN ESQDVLLFDA LAKEPALVTE ETNWFGGVVK EEEVTSNSNA FQVFEEKPRK  60
EKSYRGVRRR PWGKYAAEIR DSTRRGVRVW LGTFDSAEAA ALAYDQAAFA LRGPLAVLNF  120
PVEVVRESLQ DIKCRYDEGC SPVVALKRRH SMRRKSACKK ISCNKEHEKV KSLISSNFDL  180
WIKDPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-43ERF family protein