PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G22772
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 177aa    MW: 19928 Da    PI: 5.3524
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G22772genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.4e-191667155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++y+G r+++ +gr++AeIrdp+ ng  +r +lg+f+taeeAa+a+++a+ +++g
  Ro02_G22772 16 TRYRGTRRRP-WGRYAAEIRDPTRNG--ARLWLGTFDTAEEAARAYDRAAFRFRG 67
                 58********.**********98887..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MEGKRAENQP KARDQTRYRG TRRRPWGRYA AEIRDPTRNG ARLWLGTFDT AEEAARAYDR  60
AAFRFRGNLA ILNFPNEYQY HNSSTSTFVS PNSDSSSFAL TSAAAADTGK HNGKEESEVI  120
ELEYLDNMIL EELLATKQDA DGNYMEIKAN TIPGFVLTLK LNYDQQDFAA LSGQTSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-20ERF family protein