PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G22773
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 149aa    MW: 16548.2 Da    PI: 5.0871
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G22773genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.9e-202073256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+GVr+++ +g+++AeIrd +  g+ +r +lg+f taeeAa+a+++a+ +++g+
  Ro02_G22773 20 KYRGVRRRP-WGKFAAEIRDSTRHGQGARLWLGTFNTAEEAARAYDRAAFSMRGA 73
                 8********.**********5445566*************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    
MEEDSSRGGK TKQEEQKEVK YRGVRRRPWG KFAAEIRDST RHGQGARLWL GTFNTAEEAA  60
RAYDRAAFSM RGALAILNFP SEHGLPDSSA AAAISSPSSS SSSPTSFSES SSTTRTQPGR  120
EVFEFECLDD KVLEDLLDFD KKNEMFEAQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.15e-29ERF family protein