PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G22774
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 171aa    MW: 19323.9 Da    PI: 8.9349
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G22774genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.76.1e-182070255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr ++ +g+++AeIrd +    +  r +lg+f ta++Aa+a+++a+ +++g
  Ro02_G22774 20 KYRGVRKRP-WGKFAAEIRDSTR---QgVRLWLGTFNTAKDAARAYDKAAFSMRG 70
                 8********.**********322...24*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    
MEEDPSRSNK VEEDGQKDVK YRGVRKRPWG KFAAEIRDST RQGVRLWLGT FNTAKDAARA  60
YDKAAFSMRG SLSILNFPNE HGLVGVDNAA ATSSSPLSFS TSSTLQNMEG TMRKEPGEEV  120
FVFEYLDDKI LEDLLDFDNK KKRVKLGVVT NIMKLQQKSS MTTYYLTCLA Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139146NKKKRVKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-31ERF family protein