PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G23738

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 446aa MW: 50143.5 Da PI: 6.0105

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G23738	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	39.1	2.4e-12	63	196	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...........................................tekerrtr 55 +fY+ Y+ GFs+rk++ k++ + + +r++vCsk+g+r+ + k + ++ Ro02_G23738 63 EFYSYYSLAKGFSMRKRRCDKNRAGTLVLCRQLVCSKQGQRRGSGPKeddgdeqlvkerdakgtesvhtqkeicsesnvrgkriigdntnPKARKWIC 160 6**************************************988777789******************************99875333333356 PP FAR1 56 aetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 tr + +++vk+ k +g+++ +++ ++HnHel+ Ro02_G23738 161 RLTRRNFPSSMTVKLCKdRGVYYASEFTTNHNHELT 196 789999******99**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MNPNSVDGSS SDCSDSADST AFTDLGHEDE AQEVMEFRGK PFKDLTFDDL RDVEFRTIAE 60 VEEFYSYYSL AKGFSMRKRR CDKNRAGTLV LCRQLVCSKQ GQRRGSGPKE DDGDEQLVKE 120 RDAKGTESVH TQKEICSESN VRGKRIIGDN TNPKARKWIC RLTRRNFPSS MTVKLCKDRG 180 VYYASEFTTN HNHELTRPEH LHFMRSHRKV KDSDIAAVTA MRKVSVKTSC AYEYLVHAAS 240 GHEFVGFTMK DLYNKLNQAH TEVLLDGDAQ ALEDDYRSQH FEPVCGIHMQ CLQEEVGRIF 300 THDIFLLIKD QINYESKFVV VNRDKHPTTG SANGTAVQIA RYVPEFVDGL HPNVVRDPVG 360 NVPGGGSTAR NVVDNDSDSS LGEGSSNDSE ACLQTSNDPF DHEMRQSPAT TSLMHHNEEV 420 RPFGFVGGYD NDSMRTESVS HTQSEI

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MNPNSVDGSS SDCSDSADST AFTDLGHEDE AQEVMEFRGK PFKDLTFDDL RDVEFRTIAE  60
VEEFYSYYSL AKGFSMRKRR CDKNRAGTLV LCRQLVCSKQ GQRRGSGPKE DDGDEQLVKE  120
RDAKGTESVH TQKEICSESN VRGKRIIGDN TNPKARKWIC RLTRRNFPSS MTVKLCKDRG  180
VYYASEFTTN HNHELTRPEH LHFMRSHRKV KDSDIAAVTA MRKVSVKTSC AYEYLVHAAS  240
GHEFVGFTMK DLYNKLNQAH TEVLLDGDAQ ALEDDYRSQH FEPVCGIHMQ CLQEEVGRIF  300
THDIFLLIKD QINYESKFVV VNRDKHPTTG SANGTAVQIA RYVPEFVDGL HPNVVRDPVG  360
NVPGGGSTAR NVVDNDSDSS LGEGSSNDSE ACLQTSNDPF DHEMRQSPAT TSLMHHNEEV  420
RPFGFVGGYD NDSMRTESVS HTQSEI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-10	FAR1 family protein