PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G25335

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB_related

Protein Properties

Length: 927aa MW: 104799 Da PI: 6.3421

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G25335	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.1	3.5e-07	42	71	1	30
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +++W +eE+ l+ +v ++G g W+tI + Ro02_G25335 42 KQKWNAEEEAALKAGVVKHGAGKWRTILKD 71 79*************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 927 aa Download sequence
FLISNECPDL SLIACADVDH LVFCRLILWR NSFLLLSMGA PKQKWNAEEE AALKAGVVKH 60 GAGKWRTILK DPEFARILYL RSNVDLKKEG HVHDHRLDDL IMEAITSLKD PGGSNKTTIA 120 AYIEEQYWAP ADFKRLLSAK LKFLTASGKL IKVKRRYRIA PTPIFSEKRR NSSMFLFEGR 180 QRVSPKFDKD DGTMLMKTQI DLELAKMRTM TSQEAAAAAA RAVAEAEAAI AEAEEAARDA 240 EAAEADAEAA QAFADAAMKT LKGRNPSKTV KSIWKWKAAV VSRVGPFTQQ HQANPAEQTK 300 TMNEDLSDKE SLLARIQQVE HERDELRKDI EQLCMQQAGP GYLVVATKMH FQRTAALEQE 360 IENLKKKLAS CSRENVNLQE ELSEAYRIKN VEAEKQLKFF QGCVAAAFAE RDHSIMEAET 420 AREKEELMSK KLCDIEKRLE EHTADCFEQK KLNDKLQTDL AMQEEQNVTF KKVIDKFYEV 480 RQHPSEGFED TSWDAKCACL LHDPAEWWSF NDTSTSKYIS SLEEELERMR NSAGNLQNRL 540 RVILTDRMIR KEMVELHRYY SQHRIHIMNL LNEGSACIKS IIDAVEEKCR QIDASRLEKL 600 EPPPGDDGGP SLSDMVAVGE GDFSKALAQA LQDKVATLLL LSQQEERHLL DRNVNAALQS 660 KIDELQRNIL QVTNEKVQAL MEMAQLKQDY HQLKESDFFS TFKISAYLSK VLQLIMYRRI 720 GQETKRGNPS TEIGDRRVVT HERDGKLRSL LKKTYLSRWV GTRDFGGNEA EGDLNIDGNL 780 SGRRSNSMEF VRMKIENATL KESMGSMEHL TTTVHRLRLS LSKAKESVIS GDTRRTSLSE 840 NLDNIINEAK LVKTALGSSL PLSWSAEVDV EFSGPSVTNE PGDVYGEPSH EKIDSVYAAG 900 FEMVELLILA AQILKDNTSK TLVVCEL

Sequence ? help Back to Top

Protein Sequence Length: 927 aa Download sequence

FLISNECPDL SLIACADVDH LVFCRLILWR NSFLLLSMGA PKQKWNAEEE AALKAGVVKH  60
GAGKWRTILK DPEFARILYL RSNVDLKKEG HVHDHRLDDL IMEAITSLKD PGGSNKTTIA  120
AYIEEQYWAP ADFKRLLSAK LKFLTASGKL IKVKRRYRIA PTPIFSEKRR NSSMFLFEGR  180
QRVSPKFDKD DGTMLMKTQI DLELAKMRTM TSQEAAAAAA RAVAEAEAAI AEAEEAARDA  240
EAAEADAEAA QAFADAAMKT LKGRNPSKTV KSIWKWKAAV VSRVGPFTQQ HQANPAEQTK  300
TMNEDLSDKE SLLARIQQVE HERDELRKDI EQLCMQQAGP GYLVVATKMH FQRTAALEQE  360
IENLKKKLAS CSRENVNLQE ELSEAYRIKN VEAEKQLKFF QGCVAAAFAE RDHSIMEAET  420
AREKEELMSK KLCDIEKRLE EHTADCFEQK KLNDKLQTDL AMQEEQNVTF KKVIDKFYEV  480
RQHPSEGFED TSWDAKCACL LHDPAEWWSF NDTSTSKYIS SLEEELERMR NSAGNLQNRL  540
RVILTDRMIR KEMVELHRYY SQHRIHIMNL LNEGSACIKS IIDAVEEKCR QIDASRLEKL  600
EPPPGDDGGP SLSDMVAVGE GDFSKALAQA LQDKVATLLL LSQQEERHLL DRNVNAALQS  660
KIDELQRNIL QVTNEKVQAL MEMAQLKQDY HQLKESDFFS TFKISAYLSK VLQLIMYRRI  720
GQETKRGNPS TEIGDRRVVT HERDGKLRSL LKKTYLSRWV GTRDFGGNEA EGDLNIDGNL  780
SGRRSNSMEF VRMKIENATL KESMGSMEHL TTTVHRLRLS LSKAKESVIS GDTRRTSLSE  840
NLDNIINEAK LVKTALGSSL PLSWSAEVDV EFSGPSVTNE PGDVYGEPSH EKIDSVYAAG  900
FEMVELLILA AQILKDNTSK TLVVCEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.1	3e-36	MYB_related family protein