PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G25595
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 498aa    MW: 57347.1 Da    PI: 7.5364
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G25595genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.63.4e-111182176
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76
                 ffk+   ++ ++++ l++p kf ++++++  e  tl l+ +s  sW+v++  +   g ++++ GW+eF ++n L +
  Ro02_G25595 11 FFKII--KSGFNTDDLRIPPKFQRHMMNELSERATLELKGSSKCSWTVQV--SEVEGDIYFKHGWQEFIRENSLGD 82
                 77777..88889999*******9887555557779***************..999999***************964 PP
2B337.15.7e-121752421687
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                  + +p +f ++h   +++   ++l++++gr W+vk+    +  ++ l++GW +F +an+++ gD + F l++r
  Ro02_G25595 175 VAVPTDFSRKHL--PQGYYYIVLKNSKGRNWNVKV--VPSTMTVKLSGGWAKFKRANRINFGDACRFDLVER 242
                  678999999994..235678***************..*******************************9875 PP
3B351.12.4e-16269357599
                  -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     s  l++ +l +p kf e++  +++  e+  l+++d+    W++++   ++ ++++l++GW+eF +++++ +g+++vF++dgr++f   +++f+k
  Ro02_G25595 269 I--SPGLNTEILKIPQKFQEHIlnELS--EKALLKIKDSVYCAWNIRV--HQTESGIYLKEGWREFLEDHEVGDGEVLVFRYDGRMQF--SIQIFDK 357
                  4..77889999*******977775444..556899999999*******..999999********************************..9999997 PP
4B341.52.4e-134214971698
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  +v+p +f ++h   ++++ +++l++++gr+W+v++    ++ ++ l +GW +F +an+++++D+++F l++  + ++vv+++r
  Ro02_G25595 421 VVVPTDFSRKHL--PQGHYDIVLKNSEGRKWKVNV--VPCGLTIQLCGGWVKFKRANRINSKDICIFDLVK--RNTMVVHIIR 497
                  799********5..347789***************..9999999999*********************987..5566999988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    
MARRASKEPT FFKIIKSGFN TDDLRIPPKF QRHMMNELSE RATLELKGSS KCSWTVQVSE  60
VEGDIYFKHG WQEFIRENSL GDFEYERAMH FSIEIFDKTA CMRENFLENS TVANATKRPQ  120
GRPRKCKHSA GKNIPSCQPT ELKEIKEEEE EEDATLPNSK LPSFTSIIGP RSYNVAVPTD  180
FSRKHLPQGY YYIVLKNSKG RNWNVKVVPS TMTVKLSGGW AKFKRANRIN FGDACRFDLV  240
ERNTLLETME TGPSENGIEE KKPRFCTIIS PGLNTEILKI PQKFQEHILN ELSEKALLKI  300
KDSVYCAWNI RVHQTESGIY LKEGWREFLE DHEVGDGEVL VFRYDGRMQF SIQIFDKNHV  360
ERVNFNYLEN ETHENPALAN NSELNGGEAD YQDSEEEEDA TLPMSELPSF ASIIGARIYN  420
VVVPTDFSRK HLPQGHYDIV LKNSEGRKWK VNVVPCGLTI QLCGGWVKFK RANRINSKDI  480
CIFDLVKRNT MVVHIIRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.14e-20B3 family protein