PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G25777

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MIKC_MADS

Protein Properties

Length: 248aa MW: 28510.5 Da PI: 9.5498

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G25777	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.5	1.8e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +iifsstg+ly+y+s Ro02_G25777 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIIFSSTGRLYDYAS 59 8***********************************************86 PP
2	K-box	83.5	4.5e-28	81	171	9	99
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + +++ + +q+e+a+Lk++++ Lq+ +R+l+Ge+L+ Ls k+Lq+Le++Le slk +R kK+++l+++i+el +k + +++en +L kkl+ Ro02_G25777 81 NPASEVKFWQREAANLKQQLQYLQECHRQLMGEELSGLSTKDLQNLETKLEMSLKGVRLKKDQILKDEINELNQKGNFIHQENVELYKKLD 171 5678899********************************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLIIFSS TGRLYDYAST 60 SMKSVIDRYN KLKEEHHQLL NPASEVKFWQ REAANLKQQL QYLQECHRQL MGEELSGLST 120 KDLQNLETKL EMSLKGVRLK KDQILKDEIN ELNQKGNFIH QENVELYKKL DLIGKENVEL 180 QRKAYGARDV NEENKSSQPP FTSNGYNLHA PIHLQLSQPE NQTEPQPQTD VPANAIKLGY 240 VSPKYLLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14210.1	2e-97	MIKC_MADS family protein