PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G26784
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 244aa    MW: 27467.9 Da    PI: 7.8834
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G26784genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-1470121155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  ++ +hn+ Er RR++iN+ ++ Lr+l+P +   ++k+ls  +++ ++ +YI +Lq
  Ro02_G26784  70 KKLNHNASERDRRKKINNLYSSLRSLVPAD---QAKRLSIPATVSRVLKYIPELQ 121
                  6789**************************...*******************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MLALSPPLFS TIGWPLEDHP TSHDHNNYFS AESSFLQFPT PLQPHFDQLD HSTPPSTAVS  60
GESTISSMAK KLNHNASERD RRKKINNLYS SLRSLVPADQ AKRLSIPATV SRVLKYIPEL  120
QHQVEGLIRR RDELLSRISK QENVMKEEKH VKSTARISRS SSSAVSTSRL SDSELSVQIS  180
TLKSTHNFIS QILQSLEEDG LQILNASSFE SSGGRVFYNL HLQVDMLNRL ECESLSEKLM  240
SFYA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.19e-54bHLH family protein