PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G27242

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 474aa MW: 52462 Da PI: 6.9351

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G27242	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.1	7.5e-06	84	105	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C C k F++k +L H+rtH Ro02_G27242 84 SCVVCRKNFPSKKSLFGHMRTH 105 6********************9 PP
2	zf-C2H2	12.5	0.00046	292	314	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H+ +H Ro02_G27242 292 YRCSVCSRTFSSYQALGGHMTSH 314 9*******************997 PP
3	zf-C2H2	10.7	0.0017	344	366	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+k F++ + L H+++H Ro02_G27242 344 HRCYVCNKAFTSYHALGGHMSSH 366 79*******************99 PP
4	zf-C2H2	15.3	5.7e-05	405	427	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F++ L H+r+H Ro02_G27242 405 HQCKTCNRTFPTGQALGGHMRLH 427 79*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MAIEETQSFQ PLAVDQQQLP TKIRNPPEVL VQDRDRGVAQ PSHVCDICHK GFYSGQALGG 60 HKSMHFREAE AMAAMTTSTS DTVSCVVCRK NFPSKKSLFG HMRTHRGNQS PQQDNNRSSS 120 SSTVSAVPVA DDECDEVYSW ADSGSGLGFD LSKTLPSGWP LTGKRSRASI GSSSSDSDET 180 VDNSSPKLVD SGLDSGPKEQ LKGLMMLAEV CEEMANARNF ITKRKKRWSA ADHYDYNELD 240 CDFRCKPCNK TFPSYQALGG HMSSHNKLKI VSMDHGHGSE GNSEPHQVVN VYRCSVCSRT 300 FSSYQALGGH MTSHCKEVKN SDNYSANHVN NEPDQPQPHQ VDVHRCYVCN KAFTSYHALG 360 GHMSSHAKIK NNNNSDRDQS NSADMSACAE DNNERHQQFY ETVPHQCKTC NRTFPTGQAL 420 GGHMRLHWNC PTEAQAQRIP RSSGPRVLGF NLNEIPTMED EEGIYAPNVL LQLN

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MAIEETQSFQ PLAVDQQQLP TKIRNPPEVL VQDRDRGVAQ PSHVCDICHK GFYSGQALGG  60
HKSMHFREAE AMAAMTTSTS DTVSCVVCRK NFPSKKSLFG HMRTHRGNQS PQQDNNRSSS  120
SSTVSAVPVA DDECDEVYSW ADSGSGLGFD LSKTLPSGWP LTGKRSRASI GSSSSDSDET  180
VDNSSPKLVD SGLDSGPKEQ LKGLMMLAEV CEEMANARNF ITKRKKRWSA ADHYDYNELD  240
CDFRCKPCNK TFPSYQALGG HMSSHNKLKI VSMDHGHGSE GNSEPHQVVN VYRCSVCSRT  300
FSSYQALGGH MTSHCKEVKN SDNYSANHVN NEPDQPQPHQ VDVHRCYVCN KAFTSYHALG  360
GHMSSHAKIK NNNNSDRDQS NSADMSACAE DNNERHQQFY ETVPHQCKTC NRTFPTGQAL  420
GGHMRLHWNC PTEAQAQRIP RSSGPRVLGF NLNEIPTMED EEGIYAPNVL LQLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53600.1	5e-14	C2H2 family protein