PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G34926

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 473aa MW: 51729.2 Da PI: 5.2044

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G34926	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.9	4.9e-10	271	319	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq Ro02_G34926 271 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 319 58************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MGSHDNDDMG FQHRNEGSLN CPSSGMSTNP LPEKVSRMAM SSISMFKPSN APDPFFGSGW 60 DPLVSLSQSD NFGGSSVASQ SEYTNHPYPV AMETQGMSST SHLVQYPSDS SFVEMVPKLP 120 CFGSGSFSEM VGSFGLPECA GISNSGCVAN YNPNRDGGID RTSTMGAQSH DDRQISEEGA 180 LGSSPNGKRR KRVPESSPNK NAEGELNKDM SGESSDYLKE QDEKKTKQEE NAASNLRGKQ 240 TGKQAKDNSQ SGDAAKDSYI HVRARRGQAT NSHSLAERVR REKISERMRL LQELVPGCNK 300 ITGKAVMLDE IINYVQSLQQ QVEFLSMKLA TVNPEVNIDI ERILSKDILN SRSGSGAIFG 360 FSPGMNSSHP YPHGIFQGTL PSTAPQFPSL PQTVLDNELQ GLFHMGFDSS SNIDNLGQNE 420 EDDLLFPETV YNQARKQEVP HDKQIDGATQ IDLVFIHYLS DKSRFNAFPF LAT

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MGSHDNDDMG FQHRNEGSLN CPSSGMSTNP LPEKVSRMAM SSISMFKPSN APDPFFGSGW  60
DPLVSLSQSD NFGGSSVASQ SEYTNHPYPV AMETQGMSST SHLVQYPSDS SFVEMVPKLP  120
CFGSGSFSEM VGSFGLPECA GISNSGCVAN YNPNRDGGID RTSTMGAQSH DDRQISEEGA  180
LGSSPNGKRR KRVPESSPNK NAEGELNKDM SGESSDYLKE QDEKKTKQEE NAASNLRGKQ  240
TGKQAKDNSQ SGDAAKDSYI HVRARRGQAT NSHSLAERVR REKISERMRL LQELVPGCNK  300
ITGKAVMLDE IINYVQSLQQ QVEFLSMKLA TVNPEVNIDI ERILSKDILN SRSGSGAIFG  360
FSPGMNSSHP YPHGIFQGTL PSTAPQFPSL PQTVLDNELQ GLFHMGFDSS SNIDNLGQNE  420
EDDLLFPETV YNQARKQEVP HDKQIDGATQ IDLVFIHYLS DKSRFNAFPF LAT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	227	KRRKRVPESSPNKNAEGELNKDMSGESSDYLKEQDEKKTK
2	189	228	KRRKRVPESSPNKNAEGELNKDMSGESSDYLKEQDEKKTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	7e-86	bHLH family protein