PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G34954
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 252aa    MW: 28674.1 Da    PI: 5.1032
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G34954genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-173983147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+ T+eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
      Ro02_G34954 39 RGNITQEEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNTT 83
                     7999******************.*********.************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MEKENGEEFP KKLVSHSLKR CGKSCRLRWL NYLRPDIKRG NITQEEEDLI IRLHKLLGNR  60
WSLIAGRIPG RTDNEIKNYW NTTLGKKVIN GDDEDHQQVC RSVENKKKKK NKSKPLTMAV  120
ESIAAVPTRA LRCNRVVVTS DLVPHQVVED NNVHGFSTGM DKCTTNSSEE DTTPTTTTTT  180
TSEDLVLDFD VGMLFNVSEN IPDNSDDYWE VCEFGVEDQY GGGGSNNFKW PSVGSEPILF  240
SEEMLKDWMR DD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.13e-39MYB family protein