PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G35013
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 91aa    MW: 10427.2 Da    PI: 10.437
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G35013genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.82.5e-27959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien+snr+vt+skRrngi+KKA+E+ vLCda+v++ii ss+gk+ ey+s
  Ro02_G35013  9 KRIENSSNRKVTYSKRRNGIIKKAKEITVLCDAKVSLIINSSSGKMVEYCS 59
                 79***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    
MGRGKIEIKR IENSSNRKVT YSKRRNGIIK KAKEITVLCD AKVSLIINSS SGKMVEYCSG  60
PQETLLEIVD RYHSQTGKKL WDAKHEFMLK I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.18e-40MIKC_MADS family protein