PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G35068
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 167aa    MW: 17565.8 Da    PI: 6.5009
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G35068genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.52.3e-085068927
                 GGGTS--TTTTT-SS-SSS CS
      zf-CCCH  9 fartGtCkyGdrCkFaHgp 27
                 ++++G+Ck+G++CkF H++
  Ro02_G35068 50 HLQNGHCKFGSSCKFDHPM 68
                 5799*************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    
MAAQITSGKI IVECDSEVLV NLVENEVDTY HPLAYVLQIL LTMGATLYIH LQNGHCKFGS  60
SCKFDHPMGT MRYSPSASSL DMPVAPYPVG SLLGTLAPSS SSSELRPELI SARIPSSGNP  120
SSSSVGLIFS QSGGSVSLSD VQLSSQTSVP ISSSRSTRQG GEVRRSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.24e-18C3H family protein