PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G35585
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 157aa    MW: 17618.2 Da    PI: 10.113
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G35585genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.37.4e-27958150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 k+i+n s rqvtfskRr g++KKAeELS+LCdae+av++fsstgkl+  s
  Ro02_G35585  9 KKIDNASARQVTFSKRRRGLFKKAEELSTLCDAEIAVVVFSSTGKLFHHS 58
                 68********************************************9776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    
MTRKKIEIKK IDNASARQVT FSKRRRGLFK KAEELSTLCD AEIAVVVFSS TGKLFHHSNS  60
TSSVEQVIKR HSLCSEKLDK LNQPSLELQG EKFLNEINFL KWKGAQLMKE NKLLKQMART  120
SRVQTVLESS APDICSSSAD PPQDHDSSDT SLKLGLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-40MIKC_MADS family protein