PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G35662
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 194aa    MW: 22224 Da    PI: 7.0046
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G35662genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.33.6e-243696259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                 dD+y+WrKYGqKe+ g+++pr YYr t++   gC+++k+v r +ed+++++i+Y g+H+++
  Ro02_G35662 36 DDEYSWRKYGQKEILGAKYPRDYYRYTHRntqGCSARKQVRRMDEDQTILTIMYCGNHTCR 96
                 8***************************98889**************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    
MKKKSVNWTL RCRETLAIRT EQVRVGSKIG IGGPPDDEYS WRKYGQKEIL GAKYPRDYYR  60
YTHRNTQGCS ARKQVRRMDE DQTILTIMYC GNHTCRHVSK LVPPPSPQQQ EEMNVVDNFW  120
GTSCSSSRAS TSPPVGKSTQ TERRSTFDLT GMDPVPDMDL SIDPFLDMDL LMHLRGLDQF  180
HNTDLGEVDT VEDC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-30WRKY family protein