PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G35873
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HB-other
Protein Properties Length: 129aa    MW: 15117.9 Da    PI: 8.7899
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G35873genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox44.13.4e-1475127254
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  +k++++  + +++Lee+  kn+yp+ +++ee+A++l L+ +q+++W qN+R+k
  Ro02_G35873  75 SKKRKYDGYTIQQLEEFITKNPYPNDNQKEEMARQLLLQPKQITYWIQNHRTK 127
                  677899999*******999********************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    
MSRQVRSFDE LIQPSNLDYE GWLGELPRGA VKNYDMPKEK QLQISSWIGP SDPRSPEEDL  60
DPSSGSDISP SRFKSKKRKY DGYTIQQLEE FITKNPYPND NQKEEMARQL LLQPKQITYW  120
IQNHRTKKG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.22e-14HD-ZIP family protein