PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G35899
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 955aa    MW: 110568 Da    PI: 10.1812
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G35899genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.26.2e-1319104199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ffk+   +++++++ l++p +f  +h +++  s+  +l+  +   sW+v+         y+l++GW+eF ++n L + +f+vF++dg+++f   v +f
  Ro02_G35899  19 FFKII--KSSSNTDYLRIPPEFR-KHILNE-LSMRAILTPtSVDCSWTVRG--------YYLKEGWQEFLRDNSLGDSEFLVFRYDGNMCF--SVDIF 102
                  78888..56666677*******7.665664.66777776624459999999........********************************..99999 PP

                  -S CS
           B3  98 rk 99 
                  +k
  Ro02_G35899 103 EK 104
                  87 PP
2B335.32.1e-111732461695
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  + +p +f ++h   ++ + + +le+++g++W+v+    ++++++ l +GW  F++ ++++ gD+++F l+++s++  vv+
  Ro02_G35899 173 VDVPTSFSRRHL--PPDNYKFILENTDGETWQVNG--ARSKNTIKLCGGWVTFARCHRIELGDVCLFVLQSKSNK--VVH 246
                  568999999994..346679***************..*******************************9875555..554 PP
3B359.18.1e-19295387199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ffk+  ps+++++  l++p kf+++++++  +  tl+l+ +s  sW+vk+   k+++ +++++GW+eF ++  L +++f+vF ++g+++f   vk+f+
  Ro02_G35899 295 FFKIIFPSYSTEH--LRIPPKFLRHIDYELSKRATLKLKRSSEYSWNVKV--IKSGRDVYFKDGWQEFLRDTSLGDKEFLVFIYNGKMCF--SVKIFD 386
                  8999999999988..9*******999666667789***************..999999********************************..*****9 PP

                  S CS
           B3  99 k 99 
                  k
  Ro02_G35899 387 K 387
                  8 PP
4B337.73.8e-125266111099
                  HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EE.EEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  10 vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsW.evkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   l++ ++++ k+f +e+  +gk      + l++++g +W +vkl  ++++++ ++tkGW  F+ an++k+g  + F+  +  e + +v++++k
  Ro02_G35899 526 ILRLTQVYVAKPFYKENlsSGK---YEFVFLKNSEGTKWyQVKL--SRYRETAFMTKGWGAFALANQVKVGSLCQFQILK--ENKILVHILNK 611
                  566778999********75333...33599******99857999..*******************************655..56668998876 PP
5B331.92.4e-106216882799
                  ---..--SEEEEEETTS-EEE.EEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  27 ggkkeesktltledesgrsWe.vkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +++  e  tl l+ +   sW+ vk+  rk+++ + +++GW+eF ++n L +++f+vF ++g+++f  +vk+f++
  Ro02_G35899 621 QLS--ERATLNLKRSFECSWNnVKV--RKSGRDVCFKDGWQEFLRDNFLGDKEFLVFIYHGKMRF--CVKIFDT 688
                  344..45689999999999964788..999999**************************999999..****996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 955 aa     Download sequence    
MARVVFNNGG MDEQKVPTFF KIIKSSSNTD YLRIPPEFRK HILNELSMRA ILTPTSVDCS  60
WTVRGYYLKE GWQEFLRDNS LGDSEFLVFR YDGNMCFSVD IFEKTGFKRT ESPGIRRHQR  120
STFSNNTKRP RGRPRKYSNA AEHTPNGESS IPIEHTESKF PAFKKTITKL YAVDVPTSFS  180
RRHLPPDNYK FILENTDGET WQVNGARSKN TIKLCGGWVT FARCHRIELG DVCLFVLQSK  240
SNKVVHMIKF KSNFHQQKPE TNTPLYLLAK IQVLWGQKMV RIPKNGIEKK QPPSFFKIIF  300
PSYSTEHLRI PPKFLRHIDY ELSKRATLKL KRSSEYSWNV KVIKSGRDVY FKDGWQEFLR  360
DTSLGDKEFL VFIYNGKMCF SVKIFDKNAC ERMDFSDIKT HQNSRSSKRQ SGRPRKSSKG  420
VPAHKLKEVK EEEHDYTNTG KSTSKSTERP TKTTSESTKR PPGRPRKYPA TCSDNLRPSN  480
SCKENSGKHI PNSEFDVLKE VKEEEEDYQE SAELFKSKLQ YFTQKILRLT QVYVAKPFYK  540
ENLSSGKYEF VFLKNSEGTK WYQVKLSRYR ETAFMTKGWG AFALANQVKV GSLCQFQILK  600
ENKILVHILN KTYSACHIAN QLSERATLNL KRSFECSWNN VKVRKSGRDV CFKDGWQEFL  660
RDNFLGDKEF LVFIYHGKMR FCVKIFDTDG CERMDFHGTK THKNSRLSFA STSKPKSSTV  720
AKDADLFSLN KRISNLIRTG RIAQARKAFD QMKQRNIVTW NSMITGYVKR REMAKARKLF  780
DEMPERDVVS WNLMISGCIS CCGNRYIEEG RSLFDQMPVR DCVSWNTMIS GYAKNWRMGE  840
ALQIFDSMPE RSVNGDVVRA VEFFERMPQR NGASLSALVS GIIQNGELDQ AARIALECGN  900
RHEGVEDLVH AYNMLIAGYG QRGRVEEARH LFNQIPFCHE KGKEGGRRFE RNVVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128136KRPRGRPRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.14e-26B3 family protein