PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G35903
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 334aa    MW: 38696.5 Da    PI: 8.6921
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G35903genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-1477033100
                  -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
           B3  33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                    tl l+++   sW+vk+  rk+++ +++++GW++F ++n L + +f++F +dg++ f   +++f+ks
  Ro02_G35903   7 RATLNLKTSLECSWNVKV--RKSGRDVYFEDGWQKFLRDNSLGDSEFLLFNYDGKMHF--AIQIFDKS 70 
                  458999999*********..*********************************99999..99999985 PP
2B363.92.4e-2017926312100
                  HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
           B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                  +++ l++p +f+e++ ++   +  l l+++s   W+vk+  +k++g++++++GW+eF k+n +++gDf+vF+++g++ f  +v++f+ks
  Ro02_G35903 179 TTKHLRIPPSFLERIRNDLSDHANLNLNTSSEWPWKVKV--SKTRGGVYFKDGWQEFLKDNSVDDGDFLVFEYEGNMHF--RVHIFDKS 263
                  33449**********666567778***************..**********************************9**9..****9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MNELSERATL NLKTSLECSW NVKVRKSGRD VYFEDGWQKF LRDNSLGDSE FLLFNYDGKM  60
HFAIQIFDKS GCERDDFPDT EQQNFNLAES TKRTGGRPTK YSEVAGKQIA SCESDYLKEV  120
KEDEEDDADA ESAEPFPHFT SKLRSTAYQV RRKMVRKTPN NGIKEKRPSF FKVILLGYTT  180
KHLRIPPSFL ERIRNDLSDH ANLNLNTSSE WPWKVKVSKT RGGVYFKDGW QEFLKDNSVD  240
DGDFLVFEYE GNMHFRVHIF DKSCCERDSF PNNETQKKST FAEHKKRHPG TPRKSHIGCS  300
KLPRPLNSSK DKSGKRSAVR CCYILITTGY MELI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.12e-16B3 family protein