PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G36006

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HB-other

Protein Properties

Length: 396aa MW: 44668 Da PI: 9.4315

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G36006	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.5	6.2e-20	4	60	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r Rt++t+ q e+Le+++ +++ps++++eeL+k+l+L +qV+vWF NrRak+++ Ro02_G36006 4 KRLRTKWTPIQRETLEKAYSAEKTPSEATKEELSKQLELGYEQVTVWFMNRRAKDRR 60 789****************************************************97 PP
2	Homeobox	44.3	3e-14	66	116	3	53
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 k+ ++t++ql +Le+ ++ +++p+ ++reeL kklgLte qV+ W+ +R Ro02_G36006 66 KKSRMTRHQLATLEKTYAAEKNPTVSKREELGKKLGLTEIQVRLWYNKKRF 116 56679*****************************************99995 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MAFKRLRTKW TPIQRETLEK AYSAEKTPSE ATKEELSKQL ELGYEQVTVW FMNRRAKDRR 60 QGIVAKKSRM TRHQLATLEK TYAAEKNPTV SKREELGKKL GLTEIQVRLW YNKKRFEDQE 120 KEKKEKKKRG TAANKPRKSA VASSCDHLAF VSSDLTGIPN PDTPCKRLEN LDALMVDVTD 180 LISKPSPCPN FHPLDDKSFV DQDKLTLAKK GLQKIFDCGV EALADPQVQE EFLAYSATLL 240 LVDSCPSELK ANLSSFRGNL SEETCAFLQA QHELKVASDL AASITERRFV LRFHHSKYAE 300 VKKQIIASDE KVANLKAMIK RLESSLATEE SNRAKIDEVL DTIETGVITA RDGLVSDIAQ 360 VSAMEGTTKA ANQLVAQRQS AWESLRNAFT ENRNFA

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MAFKRLRTKW TPIQRETLEK AYSAEKTPSE ATKEELSKQL ELGYEQVTVW FMNRRAKDRR  60
QGIVAKKSRM TRHQLATLEK TYAAEKNPTV SKREELGKKL GLTEIQVRLW YNKKRFEDQE  120
KEKKEKKKRG TAANKPRKSA VASSCDHLAF VSSDLTGIPN PDTPCKRLEN LDALMVDVTD  180
LISKPSPCPN FHPLDDKSFV DQDKLTLAKK GLQKIFDCGV EALADPQVQE EFLAYSATLL  240
LVDSCPSELK ANLSSFRGNL SEETCAFLQA QHELKVASDL AASITERRFV LRFHHSKYAE  300
VKKQIIASDE KVANLKAMIK RLESSLATEE SNRAKIDEVL DTIETGVITA RDGLVSDIAQ  360
VSAMEGTTKA ANQLVAQRQS AWESLRNAFT ENRNFA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	60	NRRAKDRR
2	113	129	KKRFEDQEKEKKEKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	8e-13	HB-other family protein