PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G02001

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WOX

Protein Properties

Length: 270aa MW: 29877.4 Da PI: 8.1205

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G02001	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.8	5.8e-21	22	82	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++tkeq+ Le+l+ + r+psae++++++++l +++ ++V++WFqN++a++++ Ro03_G02001 22 TTRWNPTKEQISMLENLYGQgVRTPSAEQIQQITARLraygHIEGKNVFYWFQNHKARQRQ 82 58***************99************************************96 PP
2	Wus_type_Homeobox	115.1	3.4e-37	21	84	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRW+Pt+eQi +Le+ly +G+rtP++e+iq+ita+L++yG+ie+kNVfyWFQN+kaR+rqkq Ro03_G02001 21 NTTRWNPTKEQISMLENLYGQGVRTPSAEQIQQITARLRAYGHIEGKNVFYWFQNHKARQRQKQ 84 689***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence
MEGEDQHVKG GGSARGMGVE NTTRWNPTKE QISMLENLYG QGVRTPSAEQ IQQITARLRA 60 YGHIEGKNVF YWFQNHKARQ RQKQKQEASL AYFNRFLHTA AASSQYPIFP PPEYPCPNVI 120 CSPYYIPPVP REIGLYPQSH LKVPLQSVGV KRRPRIEKLD VPRSTCSGGG GGYEPKCHGY 180 GGEGRCSVDV NDATNKLMSN FDDQETLPLF PLTPTGLLQD RDESPSSAAG KFAQNSTALI 240 SSSGTVEGHG DRPNFYDFFS GGQGFCDRLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59340.1	4e-36	WOX family protein