PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G02056
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB
Protein Properties Length: 268aa    MW: 30559.1 Da    PI: 6.5254
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G02056genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.7e-171057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +lv+ v ++G ++W+ Ia+  g++Rt+k+c++rw +yl
      Ro03_G02056 10 KGPWTEQEDFQLVCFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 57
                     79********************************************97 PP
2Myb_DNA-binding54.52.6e-1763108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
      Ro03_G02056  63 RGKMTPQEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 108
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MVQDHQEIRK GPWTEQEDFQ LVCFVGLFGD RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG  60
LKRGKMTPQE ERLVLELHSK WGNRWSRIAR KLPGRTDNEI KNYWRTHMRK KAQEKKRAVS  120
PSSSSSNCSS SSNITTNEGG ASFYDTGGVE IMASSAVKKN INGGDPEKED NYNTTKRDQR  180
EYSLDDIWED INLPEVNSIE PVYDGSYGEE ACKFACPLMA SPPPPLSWDS LFKMDEDQES  240
KNMFLPATPN DNQFLSVFED GRSSSLTG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.11e-87MYB family protein