PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G02104

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WOX

Protein Properties

Length: 238aa MW: 27172.4 Da PI: 7.1002

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G02104	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.8	1.2e-20	18	77	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +Lee+++ r+p+a+++++++++l +++ ++V++WFqN++a++++ Ro03_G02104 18 SRWCPTPEQLMILEEMYRAgVRTPNASQIQHITAQLsfygKIEGKNVFYWFQNHKARDRQ 77 8***************99***********************************996 PP
2	Wus_type_Homeobox	119.9	1.1e-38	16	78	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+PtpeQ++iLee+y++G+rtPn+++iq+ita+L+ yGkie+kNVfyWFQN+kaR+rqk Ro03_G02104 16 SSSRWCPTPEQLMILEEMYRAGVRTPNASQIQHITAQLSFYGKIEGKNVFYWFQNHKARDRQK 78 689***********************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MSPAANFSSS NSSSSSSSRW CPTPEQLMIL EEMYRAGVRT PNASQIQHIT AQLSFYGKIE 60 GKNVFYWFQN HKARDRQKLR RKLCKQLQLE QQQLYHNYYH YRHHPHHQPL LMLNQQGLLG 120 HFDQSPPASS LLQHKLSCHH HNSSSPGFLP QVRETPAAAE MVEMEKSVMN MYGHDWMTTT 180 TMDVGPPSSP ACCTRSTTIR PLKTLQLFPI TSADLKAEDH HEEGEEEESE STPSNPTD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	6e-34	WOX family protein