PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G02148

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Protein Properties

Length: 168aa MW: 19169.1 Da PI: 6.5143

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G02148	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	30.6	6e-10	57	163	2	96
EEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltled.esgrsWevkliyrkksgryvltkGW.keFvkangLkegDfvvFkl 84 +k+lt sdv++ +rl +p++ +++h ++ + +t++d + + ++ ++y+ +sg+yvl+++W ke vk +LkegD + ++ Ro03_G02148 57 KKKLTVSDVGQWSRLLVPNNLIKSHvlpflneslaqlvHSN--IGAPVTVYDcDEKTKHQLVFKYWESSGSYVLQANWiKEIVKVRKLKEGDQIGLYW 152 6999**********************9988888655333..5556888884444666777777*********899***********9997 PP -SS.SEE..EEEE CS B3 85 dgr.sefelvvkv 96 d r s f ++++ Ro03_G02148 153 DARnSMF--LFSL 163 7654554..5555 PP

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence
MAETLIWFPS LFASTKEEED QPSLALTLPS TPCALNHSTL DLELSLGSID YDLWKIKKKL 60 TVSDVGQWSR LLVPNNLIKS HVLPFLNESL AQLVHSNIGA PVTVYDCDEK TKHQLVFKYW 120 ESSGSYVLQA NWIKEIVKVR KLKEGDQIGL YWDARNSMFL FSLLKRAD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33720.1	8e-20	B3 family protein