PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G05170
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 70aa    MW: 8357.83 Da    PI: 9.3634
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G05170genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.25e-141055146
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                 +rie+  +r v f +R++ +lK A+E+ vL d+++ ++ifss+ ++
  Ro03_G05170 10 SRIEDAARRRVCFQRRLAELLKMAQEIFVLFDVQITLVIFSSDEEM 55
                 59*****************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    
MATRGNVQIS RIEDAARRRV CFQRRLAELL KMAQEIFVLF DVQITLVIFS SDEEMMFRYQ  60
ADFLVLDKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.12e-11MIKC_MADS family protein