PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G05187

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WOX

Protein Properties

Length: 623aa MW: 68795.9 Da PI: 7.564

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G05187	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.8	3.3e-17	64	124	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++ +eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ Ro03_G05187 64 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 124 89***************99***********************************995 PP
2	Wus_type_Homeobox	110.5	9.1e-36	63	125	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++k Ro03_G05187 63 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 125 689**********************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence
MSSSNRHWPS MFKSKPTHHQ WQHDVINPSL VPNGSCHRPQ YTTTTTTTTT TTTGLEDQRT 60 PEPKPRWNPR PEQIRILEAI FNSGMVNPPR DEIRKIRAQL QEYGQVGDAN VFYWFQNRKS 120 RSKHKLRLQH INSKQQQQSH KPSLTAAPSS SSSSSERSSP NKQQQQRNKA FSMGFSSSLP 180 HVVTTSHDVS SINSPTASVN QQTSIFHALP NPEVFPESAF FFPMNNPSST GPVASANFST 240 TQGFCFSELA NVVHVNNNPD LHGPCTSLLL SEIMSHNGMA SRKNIQDQEM KGAMKMDQQF 300 NYNGAVNTSP TTSGSVNVAV PSPMTHIQGE AGGAAIMGTG GAAKSMVFIN DVAFEVAAGP 360 FNVREAFGDD AVLIHSSGHP VFTNEWGVTL QSLHHGAFYY LELCKDMGAY RADDDYDYLF 420 KVVLIGDSGV GKSNLLSRFT RNEFSLESKS TIGVEFATRS IRVDDKVVKA QIWDTAGQER 480 YRAITSAYYR GAVGALLVYD VTRHVTFENV ERWLKELRDH TDANIVIMLV GNKGDLRHLR 540 AVSTEDAQAF AERENTFFME TSALESMNVD NAFTEVLSQI YRVVSRKALD IGDDPAALPK 600 GQTINVGGKD DVSAVKKVGC CST

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence

MSSSNRHWPS MFKSKPTHHQ WQHDVINPSL VPNGSCHRPQ YTTTTTTTTT TTTGLEDQRT  60
PEPKPRWNPR PEQIRILEAI FNSGMVNPPR DEIRKIRAQL QEYGQVGDAN VFYWFQNRKS  120
RSKHKLRLQH INSKQQQQSH KPSLTAAPSS SSSSSERSSP NKQQQQRNKA FSMGFSSSLP  180
HVVTTSHDVS SINSPTASVN QQTSIFHALP NPEVFPESAF FFPMNNPSST GPVASANFST  240
TQGFCFSELA NVVHVNNNPD LHGPCTSLLL SEIMSHNGMA SRKNIQDQEM KGAMKMDQQF  300
NYNGAVNTSP TTSGSVNVAV PSPMTHIQGE AGGAAIMGTG GAAKSMVFIN DVAFEVAAGP  360
FNVREAFGDD AVLIHSSGHP VFTNEWGVTL QSLHHGAFYY LELCKDMGAY RADDDYDYLF  420
KVVLIGDSGV GKSNLLSRFT RNEFSLESKS TIGVEFATRS IRVDDKVVKA QIWDTAGQER  480
YRAITSAYYR GAVGALLVYD VTRHVTFENV ERWLKELRDH TDANIVIMLV GNKGDLRHLR  540
AVSTEDAQAF AERENTFFME TSALESMNVD NAFTEVLSQI YRVVSRKALD IGDDPAALPK  600
GQTINVGGKD DVSAVKKVGC CST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45980.1	4e-48	WOX family protein