PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G05207

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TCP

Protein Properties

Length: 225aa MW: 25615.8 Da PI: 4.618

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G05207	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.3	1.4e-34	79	168	3	87
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssa....sec..eaesssssasnsss 87 ++kdrhsk++T++g+RdRR Rlsa++a++f+d+qd+LG+d++sk+i+WL+ +ak+aik+l ++ + ++ + c e+e+ + +++ ++ Ro03_G05207 79 ARKDRHSKVYTSKGPRDRRFRLSAQTAIEFYDVQDRLGYDRPSKAIDWLIHKAKAAIKALDDSsaT--QQpqhhQGCiaEPETVETQQH-YHE 168 79*************************************************************552..332233445542222222222.111 PP

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence
MSQQRESKTE EEEEEEEEEE DDDENEAQNQ PEDAQEQADN GTKLDTNLAN LASKKPSSNN 60 GRYGRIVKVQ GGHIVRSIAR KDRHSKVYTS KGPRDRRFRL SAQTAIEFYD VQDRLGYDRP 120 SKAIDWLIHK AKAAIKALDD SSATQQPQHH QGCIAEPETV ETQQHYHERT MNNVSKEPVL 180 DYAEETLNSA SHLSEVNFME MGWLQSLMAW NYNAGDGGED YKATT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	5e-34	TCP family protein