PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G05427
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 220aa    MW: 25088.6 Da    PI: 6.0499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G05427genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH201.3e-065697755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  +ErrRR+++ +++ +Lr+l+P     ++ K    +i e  + YIk+Lq
  Ro03_G05427 56 HAERRRRQKLGDRLLTLRSLVPII---TNAK----TIIEDSITYIKELQ 97
                 79*********************6...4444....7999999**99998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MDYCDQYLND MELVGSALDE LGTTDQQRKG GRRGRMWGRR RHHDNDDSSF KSKNLHAERR  60
RRQKLGDRLL TLRSLVPIIT NAKTIIEDSI TYIKELQTNV NILQEQLFEM EASAQEAPEP  120
RKEEVDAAEL MKKFGIQIGV DVAQIDGNKL WVKAILEKKR GGFTKLVEAM TYFGFELTDT  180
NVTTSNGAMV VSSILTGFHC DTLLHVEQTR ELMQEIINGI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13964RRRHHDNDDSSFKSKNLHAERRRRQK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.12e-45bHLH family protein