PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G05746

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 337aa MW: 38005.6 Da PI: 6.7893

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G05746	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.5	1.5e-18	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEd++l++ v+ +G g+W++++r+ g+ R++k+c++rw +yl Ro03_G05746 13 RGLWSPEEDDKLIKHVTTHGHGSWSSVPRHAGLERCGKSCRLRWINYL 60 788*******************************************97 PP
2	Myb_DNA-binding	55.9	1e-17	66	109	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++ Ro03_G05746 66 RGSFTSEEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 89******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence
MGHRCCGKHK VKRGLWSPEE DDKLIKHVTT HGHGSWSSVP RHAGLERCGK SCRLRWINYL 60 RPELKRGSFT SEEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLMSQGL 120 DPQTHNLISS HKRSAASNKI TGSSNTKSQS HIDQKRPVFT VNNISQMIDS STEISYSISQ 180 PIVSNRTDTQ PPTVQPIMAA PTDNQYLVQN PNSCWTSVTD IPIFPDSTLN ISSSSSSSVF 240 GHLDDNNFIW AAGAEPFEAA PRAMDLQGEQ SNEQVVQVQQ EKDKLLEMEM KAIQDMDIAA 300 SFDQNSNFDF SLVEYYSTLM SGVMPQDYSV ADFTWNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	1e-89	MYB family protein