PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G05747

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 349aa MW: 39613 Da PI: 4.7899

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G05747	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.9	3.2e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeelv +yL +k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rd+ky++g+r+nrat++gyWkatgkd++v s + Ro03_G05747 6 LPPGFRFHPTDEELVAYYLDRKINGRTIEL-EIIPEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRAVNS-N 101 79**************************.99**********96435566888*********************************9.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +++vg+kktLv+y+grap+g +t+Wvmheyrl Ro03_G05747 102 RRAVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133 999*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MAPMSLPPGF RFHPTDEELV AYYLDRKING RTIELEIIPE VDLYKCEPWD LPDKSFLPSK 60 DMEWYFYSPR DRKYPNGSRT NRATRAGYWK ATGKDRAVNS NRRAVGMKKT LVYYRGRAPH 120 GIRTNWVMHE YRLTDSVCGS PSTSLKDSYA LCRIFKKTIQ IPKNNKEEKT TGNAVSNKKL 180 LGEDTSTGIN EGEASKGIET DQDYENYSNP DYPKFLSDTS SSDLTQGTPT ETGIADDLQA 240 PFASDEANSS ANYNLYSLGA HCSSNNLFQE TYMPNDTSFH NYQFPYPPLE LEDFPMINLA 300 AETNTSKPQI IEDYMSYDKL KDCMNGTLEE IFSLCSSQDN NSVALPMQD

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MAPMSLPPGF RFHPTDEELV AYYLDRKING RTIELEIIPE VDLYKCEPWD LPDKSFLPSK  60
DMEWYFYSPR DRKYPNGSRT NRATRAGYWK ATGKDRAVNS NRRAVGMKKT LVYYRGRAPH  120
GIRTNWVMHE YRLTDSVCGS PSTSLKDSYA LCRIFKKTIQ IPKNNKEEKT TGNAVSNKKL  180
LGEDTSTGIN EGEASKGIET DQDYENYSNP DYPKFLSDTS SSDLTQGTPT ETGIADDLQA  240
PFASDEANSS ANYNLYSLGA HCSSNNLFQE TYMPNDTSFH NYQFPYPPLE LEDFPMINLA  300
AETNTSKPQI IEDYMSYDKL KDCMNGTLEE IFSLCSSQDN NSVALPMQD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	1e-111	NAC family protein