PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G05806
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB
Protein Properties Length: 320aa    MW: 36325.2 Da    PI: 7.8216
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G05806genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-161764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l + ++  G g+W++I+++ g+ R++k+c++rw +yl
      Ro03_G05806 17 RGLWSPEEDEKLMNHINNSGHGSWSSIPKMAGLQRCGKSCRLRWINYL 64
                     788*******************************************97 PP
2Myb_DNA-binding51.62.2e-1670113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+++++d ++ lG++ W+ Ia+ m+ gRt++++k++w++
      Ro03_G05806  70 RGSFSEQEEKIIIDFHRVLGNR-WAQIAKQMP-GRTDNEVKNFWNS 113
                      899*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MSIDMGHHCC SKQKVKRGLW SPEEDEKLMN HINNSGHGSW SSIPKMAGLQ RCGKSCRLRW  60
INYLRPDLKR GSFSEQEEKI IIDFHRVLGN RWAQIAKQMP GRTDNEVKNF WNSCIKKKLI  120
SQGLDPNTHN LVIPHPPSSN SRTSHDSSSL HESSSSTIPT YEYQKPNMVW TGHLQEQNSN  180
ASQPSMGISH VPVISSSYHS YASELAIIIE KCKWGTRGNF EPSTSEPMAT KVEEMLMEPV  240
PQKEKAWEQV EIEKPNVLKR DGNSFGSCNL LDFDFLESTL VPCEMDYHLK PIVDQLAWYN  300
INIGLPKWYQ ATGAATKATP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.12e-78MYB family protein