PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G05866
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27888.6 Da    PI: 6.74
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G05866genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.17.4e-26959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 +rien + rqvtf+kRr+g+lKK +ELSvLCd+++ ++ifsstgk++ y+s
  Ro03_G05866  9 SRIENRTTRQVTFAKRRAGLLKKTHELSVLCDVQIGLVIFSSTGKMFQYCS 59
                 59***********************************************96 PP
2K-box48.73.2e-1772161290
        K-box   2 qkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                  q +sg++  ++++ae l+ e+ k++ke+++L+ ++ ++ GedL+   +++L++Le++Le+s++++R++K e+l +++++l+   ke+q +
  Ro03_G05866  72 QYASGTRiPQHSDAEILNAEMIKIRKETHELELSLQRYTGEDLSCVRFEDLEELENRLEESVNRVRARKFEILQQEVQNLRLSIKEHQAA 161
                  5567777778899999*****************************************************************998888865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MGRGKIHISR IENRTTRQVT FAKRRAGLLK KTHELSVLCD VQIGLVIFSS TGKMFQYCSD  60
STSMEEIIRR YQYASGTRIP QHSDAEILNA EMIKIRKETH ELELSLQRYT GEDLSCVRFE  120
DLEELENRLE ESVNRVRARK FEILQQEVQN LRLSIKEHQA AVFAHQHHYQ QQMEMLPKSE  180
EHRNLMEQFP FCGEEQPLLQ LATTSMQPQF ATYHTSTSSL QPNQPYLHDF SLNTPIYE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.23e-46MIKC_MADS family protein