PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G05893

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 235aa MW: 26802 Da PI: 6.5208

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G05893	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.4	7.9e-14	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +l+ +++++G +W++ ++ g+ R++k+c++rw +yl Ro03_G05893 16 KGPWSPDEDHKLIAYIQRYGIWNWSRMPKPAGLARSGKSCRLRWVNYL 63 79****************99**********************97 PP
2	Myb_DNA-binding	55	1.8e-17	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eEde ++++ + +G++ W++Ia++++ gRt++++k++w+++l Ro03_G05893 69 RGNFSKEEDETIIKLQQTMGNR-WSAIAAKLP-GRTDNEIKNYWHTHL 114 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence
MVRSSTQQCE KTPLKKGPWS PDEDHKLIAY IQRYGIWNWS RMPKPAGLAR SGKSCRLRWV 60 NYLRPDIKRG NFSKEEDETI IKLQQTMGNR WSAIAAKLPG RTDNEIKNYW HTHLKKRFNN 120 DPKANSAEKT PQLETSRENL SSFSSGMADE IDHKPQIAKQ ESICEAFGEL QSLWTESQVT 180 TAMAEDSEAM FTISTAADQV WLQQEPIFPC GSYSDASTSD YWLNVSVQSD EISGM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16490.1	2e-58	MYB family protein