PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G05930

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Protein Properties

Length: 897aa MW: 98364.7 Da PI: 7.9269

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G05930	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.9	9.1e-19	338	438	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++ + +++lv+ Ro03_G05930 338 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISHPEGLPLKVQDSKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSRLE-PGGKLVM 433 89************************555666777***********99899999999.*******************665.7777777 PP EEE-S CS B3 95 kvfrk 99 + +r+ Ro03_G05930 434 GCRRA 438 77775 PP

Sequence ? help Back to Top
Protein Sequence Length: 897 aa Download sequence
MSSSSSSSSK CYNSECSELK PEHPRKAWRL RNGEFAELCD RCALIYEEGR FCETFHVKAS 60 GWRCCESCGK RVHCGCIVSI HTFTLLDPGG IECMTCARKN IVLPSNPAWP TTLFFHSPLS 120 ERLKDMSGKN WSQLAGSGPV PWRQAPSLFN SSISSSELHA RGPYDIDGSM GINKLNAGER 180 ISVSSLEKKK VEDFSERLMK VNLAIGTPVS HENGNSGNKC TEQSNSCLNI SQQSAALKEE 240 PSTPQFVLAV PYVSANETNG QVVVTGTNLR PAPPLVKQFH GNLHNGVESS GDTQIRNARP 300 RADARGRSPL LPRYWPRFTD QELQQMSGDS NSVITPLFEK MLSASDAGRI GRLVLPKKCA 360 EAYFPPISHP EGLPLKVQDS KGKEWVFQFR FWPNNNSRMY VLEGVTPCIQ SMQLQAGDIV 420 TFSRLEPGGK LVMGCRRAST APSDQENDTN KTGNGVSAHT DVSITDTKSG EVFSNAELAD 480 PSIFPKGDKS GYIAKEVEGA KSLISRKRKN STLGSKSKRL RIEKEDLIEL KITWEEAQGL 540 LRPPPNHVPT VVVIEGFEFE EYEDGPILGK PTLYATDSKG EKIQWAQCEA CCKWRKLPVN 600 ALLLSKWTCS DNSWDPDRSL CSAAQELTTE QLEDLLPRCS SVAPKRMKAA KQDPDNIEAL 660 EGLDTLANLA ILGEGESLPA STQATTKHPR HRPGCSCIVC IQPPSGKGPK HKQTCICNVC 720 STVKRRFRTL MMRREKNKSD KEAETTRKKQ QQQQLLDDDT LLCGNAGSSS PNHRTEVLDL 780 SDDDFNRTKS SSPPYKGQID LNIQPEREEE LSPGSDSGGM IKLLQDATER YLRQQRQRLS 840 TSGGSERSSG NKSQRAGGEA GGESLSNVAT LGSSNHDGGN DHPGTLSVKA SASMTAT

Sequence ? help Back to Top

Protein Sequence Length: 897 aa Download sequence

MSSSSSSSSK CYNSECSELK PEHPRKAWRL RNGEFAELCD RCALIYEEGR FCETFHVKAS  60
GWRCCESCGK RVHCGCIVSI HTFTLLDPGG IECMTCARKN IVLPSNPAWP TTLFFHSPLS  120
ERLKDMSGKN WSQLAGSGPV PWRQAPSLFN SSISSSELHA RGPYDIDGSM GINKLNAGER  180
ISVSSLEKKK VEDFSERLMK VNLAIGTPVS HENGNSGNKC TEQSNSCLNI SQQSAALKEE  240
PSTPQFVLAV PYVSANETNG QVVVTGTNLR PAPPLVKQFH GNLHNGVESS GDTQIRNARP  300
RADARGRSPL LPRYWPRFTD QELQQMSGDS NSVITPLFEK MLSASDAGRI GRLVLPKKCA  360
EAYFPPISHP EGLPLKVQDS KGKEWVFQFR FWPNNNSRMY VLEGVTPCIQ SMQLQAGDIV  420
TFSRLEPGGK LVMGCRRAST APSDQENDTN KTGNGVSAHT DVSITDTKSG EVFSNAELAD  480
PSIFPKGDKS GYIAKEVEGA KSLISRKRKN STLGSKSKRL RIEKEDLIEL KITWEEAQGL  540
LRPPPNHVPT VVVIEGFEFE EYEDGPILGK PTLYATDSKG EKIQWAQCEA CCKWRKLPVN  600
ALLLSKWTCS DNSWDPDRSL CSAAQELTTE QLEDLLPRCS SVAPKRMKAA KQDPDNIEAL  660
EGLDTLANLA ILGEGESLPA STQATTKHPR HRPGCSCIVC IQPPSGKGPK HKQTCICNVC  720
STVKRRFRTL MMRREKNKSD KEAETTRKKQ QQQQLLDDDT LLCGNAGSSS PNHRTEVLDL  780
SDDDFNRTKS SSPPYKGQID LNIQPEREEE LSPGSDSGGM IKLLQDATER YLRQQRQRLS  840
TSGGSERSSG NKSQRAGGEA GGESLSNVAT LGSSNHDGGN DHPGTLSVKA SASMTAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	B3 family protein